BLASTP 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Query
(1400 letters)
Database: nrprot
1,444,541 sequences; 454,801,022 total letters
Searching..................................................
1 occurrence(s) of pattern in query
No pattern name given
pattern G-X(2)-G-X(2)-KG-X(245)-GW-X(2)-TGD
at position 174 of query sequence
effective database length=7.9e+07
pattern probability=5.2e-12
lengthXprobability=4.2e-04
Number of occurrences of pattern in the database is 6
WARNING: There may be more matching sequences with e-values below the threshold of 10.000000
done
Score E
(bits) Value
Significant matches for pattern occurrence 1 at position 174
SWALL|Q9R9J1|Q9R9J1 MycA. 2291 0.0
SWALL|Q8A1V8|Q8A1V8 Putative long-chain-fatty-acid--CoA ligase. 25 1e-07
GENPEPT|AE017231|AE017231_111 Mycobacterium avium subsp. paratubercul... 16 1e-04
SWALL|Q7TZX2|Q7TZX2 Possible fatty-acid-CoA ligase FADD11 (Fatty-... 14 3e-04
SWALL|Q9X7Y5|Q9X7Y5 Putative long chain fatty acid CoA ligase. 14 3e-04
SWISSPROT|Q10776|FD11_MYCTU Putative fatty-acid--CoA ligase fadD11 (EC ... 14 3e-04
Significant alignments for pattern occurrence 1 at position 174
>SWALL|Q9R9J1|Q9R9J1 MycA.
Length = 3971
Score = 2291 bits (5908), Expect = 0.0
Identities = 1400/1400 (100%), Positives = 1400/1400 (100%)
Query: 1 MYTSQFQTLVDVIRNRSNISDRGIRFIESDKIETFVSYRQLFDEAQGFLGYLQHIGIQPK 60
MYTSQFQTLVDVIRNRSNISDRGIRFIESDKIETFVSYRQLFDEAQGFLGYLQHIGIQPK
Sbjct: 1 MYTSQFQTLVDVIRNRSNISDRGIRFIESDKIETFVSYRQLFDEAQGFLGYLQHIGIQPK 60
Query: 61 QEIVFQIQENKSFVVAFWACLLGGMIPVPVSIGEDNDHKLKVWRIWNILNNPFLLASETV 120
QEIVFQIQENKSFVVAFWACLLGGMIPVPVSIGEDNDHKLKVWRIWNILNNPFLLASETV
Sbjct: 61 QEIVFQIQENKSFVVAFWACLLGGMIPVPVSIGEDNDHKLKVWRIWNILNNPFLLASETV 120
Query: 121 LDKMKKFAADHDLQDFHHQLIEKSDIIQDRIYDHPASQYEPEADELAFIQFSSGSTGDPK 180
pattern 174 *******
LDKMKKFAADHDLQDFHHQLIEKSDIIQDRIYDHPASQYEPEADELAFIQFSSGSTGDPK
Sbjct: 121 LDKMKKFAADHDLQDFHHQLIEKSDIIQDRIYDHPASQYEPEADELAFIQFSSGSTGDPK 180
Query: 181 GVMLTHHNLIHNTCAIRNALAIDLKDTLLSWMPLTHDMGLIACHLVPALAGINQNLMPTE 240
pattern 181 ************************************************************
GVMLTHHNLIHNTCAIRNALAIDLKDTLLSWMPLTHDMGLIACHLVPALAGINQNLMPTE
Sbjct: 181 GVMLTHHNLIHNTCAIRNALAIDLKDTLLSWMPLTHDMGLIACHLVPALAGINQNLMPTE 240
Query: 241 LFIRRPILWMKKAHEHKASILSSPNFGYNYFLKFLKDNKSYDWDLSHIRVIANGAEPILP 300
pattern 241 ************************************************************
LFIRRPILWMKKAHEHKASILSSPNFGYNYFLKFLKDNKSYDWDLSHIRVIANGAEPILP
Sbjct: 241 LFIRRPILWMKKAHEHKASILSSPNFGYNYFLKFLKDNKSYDWDLSHIRVIANGAEPILP 300
Query: 301 ELCDEFLTRCAAFNMKRSAILNVYGLAEASVGATFSNIGERFVPVYLHRDHLNLGERAVE 360
pattern 301 ************************************************************
ELCDEFLTRCAAFNMKRSAILNVYGLAEASVGATFSNIGERFVPVYLHRDHLNLGERAVE
Sbjct: 301 ELCDEFLTRCAAFNMKRSAILNVYGLAEASVGATFSNIGERFVPVYLHRDHLNLGERAVE 360
Query: 361 VSKEDQNCASFVEVGKPIDYCQIRICNEANEGLEDGFIGHIQIKGENVTQGYYNNPESTN 420
pattern 361 ************************************************************
VSKEDQNCASFVEVGKPIDYCQIRICNEANEGLEDGFIGHIQIKGENVTQGYYNNPESTN
Sbjct: 361 VSKEDQNCASFVEVGKPIDYCQIRICNEANEGLEDGFIGHIQIKGENVTQGYYNNPESTN 420
Query: 421 RALTPDGWVKTGDLGFIRKGNLVVTGREKDIIFVNGKNVYPHDIERVAIELEDIDLGRVA 480
pattern 421 *************
RALTPDGWVKTGDLGFIRKGNLVVTGREKDIIFVNGKNVYPHDIERVAIELEDIDLGRVA
Sbjct: 421 RALTPDGWVKTGDLGFIRKGNLVVTGREKDIIFVNGKNVYPHDIERVAIELEDIDLGRVA 480
Query: 481 ACGVYDQETRSREIVLFAVYKKSADRFAPLVKDIKKHLYQRGGWSIKEILPIRKLPKTTS 540
ACGVYDQETRSREIVLFAVYKKSADRFAPLVKDIKKHLYQRGGWSIKEILPIRKLPKTTS
Sbjct: 481 ACGVYDQETRSREIVLFAVYKKSADRFAPLVKDIKKHLYQRGGWSIKEILPIRKLPKTTS 540
Query: 541 GKVKRYELAEQYESGKFALESTKIKEFLEGHSTEPVQTPIHEIETALLSIFSEVMDGKKI 600
GKVKRYELAEQYESGKFALESTKIKEFLEGHSTEPVQTPIHEIETALLSIFSEVMDGKKI
Sbjct: 541 GKVKRYELAEQYESGKFALESTKIKEFLEGHSTEPVQTPIHEIETALLSIFSEVMDGKKI 600
Query: 601 HLNDHYFDMGATSLQLSQIAERIEQKFGCELTVADLFTYPSIADLAAFLVENHSEIKQTD 660
HLNDHYFDMGATSLQLSQIAERIEQKFGCELTVADLFTYPSIADLAAFLVENHSEIKQTD
Sbjct: 601 HLNDHYFDMGATSLQLSQIAERIEQKFGCELTVADLFTYPSIADLAAFLVENHSEIKQTD 660
Query: 661 TAKPSRSSSKDIAIIGMSLNVPGASNKSDFWHLLENGEHGIREYPAPRVKDAIDYLRSIK 720
TAKPSRSSSKDIAIIGMSLNVPGASNKSDFWHLLENGEHGIREYPAPRVKDAIDYLRSIK
Sbjct: 661 TAKPSRSSSKDIAIIGMSLNVPGASNKSDFWHLLENGEHGIREYPAPRVKDAIDYLRSIK 720
Query: 721 SERNEKQFVRGGYLDEIDRFDYSFFGLAPKTAKFMDPNQRLFLQSAWHAIEDAGYAGDTI 780
SERNEKQFVRGGYLDEIDRFDYSFFGLAPKTAKFMDPNQRLFLQSAWHAIEDAGYAGDTI
Sbjct: 721 SERNEKQFVRGGYLDEIDRFDYSFFGLAPKTAKFMDPNQRLFLQSAWHAIEDAGYAGDTI 780
Query: 781 SGSQLGVYVGYSKVGYDYERLLSANYPEELHHYIVGNLPSVLASRIAYFLNLKGPAVTVD 840
SGSQLGVYVGYSKVGYDYERLLSANYPEELHHYIVGNLPSVLASRIAYFLNLKGPAVTVD
Sbjct: 781 SGSQLGVYVGYSKVGYDYERLLSANYPEELHHYIVGNLPSVLASRIAYFLNLKGPAVTVD 840
Query: 841 TACSSSLVAVHMACKALLTGDCEMALAGGIRTSLLPMRIGLDMESSDGLTKTFSKDSDGT 900
TACSSSLVAVHMACKALLTGDCEMALAGGIRTSLLPMRIGLDMESSDGLTKTFSKDSDGT
Sbjct: 841 TACSSSLVAVHMACKALLTGDCEMALAGGIRTSLLPMRIGLDMESSDGLTKTFSKDSDGT 900
Query: 901 GSGEGVAAVLLKPLQAAIRDGDHIYGVIKGSAINQDGTTVGITAPSPAAQTEVIEMAWKD 960
GSGEGVAAVLLKPLQAAIRDGDHIYGVIKGSAINQDGTTVGITAPSPAAQTEVIEMAWKD
Sbjct: 901 GSGEGVAAVLLKPLQAAIRDGDHIYGVIKGSAINQDGTTVGITAPSPAAQTEVIEMAWKD 960
Query: 961 AGIAPETLSFIEAHGTGTKLGDPVEFNGLCKAFEKVTEKKQFCAIGSVKANIGHLFEAAG 1020
AGIAPETLSFIEAHGTGTKLGDPVEFNGLCKAFEKVTEKKQFCAIGSVKANIGHLFEAAG
Sbjct: 961 AGIAPETLSFIEAHGTGTKLGDPVEFNGLCKAFEKVTEKKQFCAIGSVKANIGHLFEAAG 1020
Query: 1021 IVGLIKSALMLNHKKIPPLAHFNKPNPLIPFHSSPFYVNQEVMDFTPEDRPLRGGISSFG 1080
IVGLIKSALMLNHKKIPPLAHFNKPNPLIPFHSSPFYVNQEVMDFTPEDRPLRGGISSFG
Sbjct: 1021 IVGLIKSALMLNHKKIPPLAHFNKPNPLIPFHSSPFYVNQEVMDFTPEDRPLRGGISSFG 1080
Query: 1081 FSGTNAHVVLEEYTPESEYAPEDGNDPHLFVLSAHTEASLYELTHQYRQYISDDSQSSLR 1140
FSGTNAHVVLEEYTPESEYAPEDGNDPHLFVLSAHTEASLYELTHQYRQYISDDSQSSLR
Sbjct: 1081 FSGTNAHVVLEEYTPESEYAPEDGNDPHLFVLSAHTEASLYELTHQYRQYISDDSQSSLR 1140
Query: 1141 SICYTASTGRAHLDYCLAMIVSSNQELIDKLTSLIQGERNLPQVHFGYKNIKEMQPAEKD 1200
SICYTASTGRAHLDYCLAMIVSSNQELIDKLTSLIQGERNLPQVHFGYKNIKEMQPAEKD
Sbjct: 1141 SICYTASTGRAHLDYCLAMIVSSNQELIDKLTSLIQGERNLPQVHFGYKNIKEMQPAEKD 1200
Query: 1201 NLSKQISDLMQHRPCTKDERITWLNRIAELYVQRAVIDWRAVYSNEVVQKTPLPLYPFER 1260
NLSKQISDLMQHRPCTKDERITWLNRIAELYVQRAVIDWRAVYSNEVVQKTPLPLYPFER
Sbjct: 1201 NLSKQISDLMQHRPCTKDERITWLNRIAELYVQRAVIDWRAVYSNEVVQKTPLPLYPFER 1260
Query: 1261 NRCWVEAVYESAKERKEKGEVALDINHTKTHIESFLKTVISNASGIRADEIDSNAHFIGF 1320
NRCWVEAVYESAKERKEKGEVALDINHTKTHIESFLKTVISNASGIRADEIDSNAHFIGF
Sbjct: 1261 NRCWVEAVYESAKERKEKGEVALDINHTKTHIESFLKTVISNASGIRADEIDSNAHFIGF 1320
Query: 1321 GLDSIMLTQVKKAIADEFNVDIPMERFFDTMNNIESVVDYLAENVPSAASTPPQESVTAQ 1380
GLDSIMLTQVKKAIADEFNVDIPMERFFDTMNNIESVVDYLAENVPSAASTPPQESVTAQ
Sbjct: 1321 GLDSIMLTQVKKAIADEFNVDIPMERFFDTMNNIESVVDYLAENVPSAASTPPQESVTAQ 1380
Query: 1381 EELVISGAQPELEHQEHMLD 1400
EELVISGAQPELEHQEHMLD
Sbjct: 1381 EELVISGAQPELEHQEHMLD 1400
>SWALL|Q8A1V8|Q8A1V8 Putative long-chain-fatty-acid--CoA ligase.
Length = 601
Score = 25.4 bits (74), Expect = 1e-07
Identities = 59/303 (19%), Positives = 102/303 (33%), Gaps = 1/303 (0%)
Query: 164 DELAFIQFSSGSTGDPKGVMLTHHNLIHNTCAIRNALAIDLKDTLLSWMPLTHDMGLIAC 223
pattern 174 **************************************************
D+LA I ++SG+TG+PKGVML H + L + + A
Sbjct: 180 DDLANILYTSGTTGEPKGVMLHHSCYLEQFHTHDERLTTMTDKDVSMNFLPLTHVFEKAW 239
Query: 224 HLVPALAGINQNLMPTELFIRRPILWMKKAHEHKASILSSPNFGYNYFLKFLKDNKSYDW 283
pattern 224 ************************************************************
+ G+ + I+ I ++ +
Sbjct: 240 CYLCIHKGVQICINLRPADIQTTIKEIRPTLMCSVPRFWEKVYAGVQEKINETTGLKKAL 299
Query: 284 DLSHIRVIANGAEPILPELCDEFLTRCAAFNMKRSAILNVYGLAEASVGATFSNIGERFV 343
pattern 284 ************************************************************
L I+V L + + I ++ F V
Sbjct: 300 MLDAIKVGRIHNLDYLRLGKTPPVMNQLKYKFYEKTIYSLLKKTIGIENGNFFPTAGAAV 359
Query: 344 PVYLHRDHLNLGERAVEVSKEDQNCASFVEVGKPIDYCQIRICNEANEGLEDGFIGHIQI 403
pattern 344 ************************************************************
P ++ ++G V ++ A+ ++ G I +
Sbjct: 360 PDEINEFVHSVGINMVVGYGLTESTATVSCTLPVGYDIGSVGVVLPGLEVKIGEDNEILL 419
Query: 404 KGENVTQGYYNNPESTNRALTPDGWVKTGDLGFIRKGNLVVTGREKDIIFV-NGKNVYPH 462
pattern 404 ******************************
+G+++T+GYY E+T A+ DGW TGD G+ + G L +T R KD+ NGK + P
Sbjct: 420 RGKSITKGYYKKAEATAAAIDADGWFHTGDAGYFKNGQLFLTERIKDLFKTSNGKYIAPQ 479
Query: 463 DIE 465
+E
Sbjct: 480 ALE 482
>GENPEPT|AE017231|AE017231_111 Mycobacterium avium subsp. paratuberculosis
str. k10, section 5 of 16 of the complete genome.
Length = 606
Score = 15.9 bits (48), Expect = 1e-04
Identities = 62/322 (19%), Positives = 110/322 (34%), Gaps = 2/322 (0%)
Query: 150 RIYDHPASQYEPEADELAFIQFSSGSTGDPKGVMLTHHNLIHNTCAIRNALAIDLKDTLL 209
pattern 174 ************************************
R +D ++ D++ + ++SG+TG+PKGV +TH NL+ A+ L D +
Sbjct: 152 RDFDFESTWRSVRPDDVVTLIYTSGTTGNPKGVEMTHANLLFECHALNAVLPSKFGDRVT 211
Query: 210 SWMPLTHDMGLIACHLVPALAGINQNLMPTELFIRRPILWMKKAHEHKASILSSPNFGYN 269
pattern 210 ************************************************************
S++P H + G ++ I + ++ +
Sbjct: 212 SYLPSAHIADRAMGLYGLEVFGAQVTVVDDPRAIAAALPDVRPTVWAAVPRIWEKLKAGI 271
Query: 270 YFLKFLKDNKSYDWDLSHIRVIANGAEPILPELCDEFLTRCAAFNMKRSAILNVYGLAEA 329
pattern 270 ************************************************************
F + ++S L +A L A + +L+
Sbjct: 272 EFTVANEQDESTRAALQWAMSVAAQRAAALVAGEQIPDELAAEWARADELVLSKLRERLG 331
Query: 330 SVGATFSNIGERFVPVYLHRDHLNLGERAVEVSKEDQNCASFVEVGKPIDYCQIRICNEA 389
pattern 330 ************************************************************
++ G +P +G EV +
Sbjct: 332 FGELRWAVSGAAPIPKETLAFFAGIGIPIAEVWGMSELSCVAAVSHPRDARLGSVGKLLP 391
Query: 390 NEGLEDGFIGHIQIKGENVTQGYYNNPESTNRALTPDGWVKTGD-LGFIRKGNLVVTGRE 448
pattern 390 ********************************************
+ G ++G V +GY P T A+ DGW+ TGD L +G L V R+
Sbjct: 392 GLEGKIADDGEFLVRGPLVMKGYRKEPAKTAEAIDADGWLHTGDILEADAQGYLRVVDRK 451
Query: 449 KDIIF-VNGKNVYPHDIERVAI 469
K++I GKN+ P +IE +
Sbjct: 452 KELIINAAGKNMSPANIENAIL 473
>SWALL|Q7TZX2|Q7TZX2 Possible fatty-acid-CoA ligase FADD11
(Fatty-acid-CoA synthetase) (Fatty-acid-CoA synthase) (EC
6.2.1.-).
Length = 647
Score = 14.5 bits (44), Expect = 3e-04
Identities = 60/320 (18%), Positives = 113/320 (35%), Gaps = 2/320 (0%)
Query: 152 YDHPASQYEPEADELAFIQFSSGSTGDPKGVMLTHHNLIHNTCAIRNALAIDLKDTLLSW 211
pattern 174 **************************************
+D ++ + +++ + ++SG+TG+PKGV +TH NL+ AI L I D + S+
Sbjct: 195 FDFESTWRAVQPEDIVTLIYTSGTTGNPKGVEMTHANLLFEGYAIDEVLGIRFGDRVTSF 254
Query: 212 MPLTHDMGLIACHLVPALAGINQNLMPTELFIRRPILWMKKAHEHKASILSSPNFGYNYF 271
pattern 212 ************************************************************
+P H + + + G + I + ++ + F
Sbjct: 255 LPSAHIADRMTGLYLQEMFGTQVTAVADARTIAAALPDVRPTVWGAVPRVWEKLKAGIEF 314
Query: 272 LKFLKDNKSYDWDLSHIRVIANGAEPILPELCDEFLTRCAAFNMKRSAILNVYGLAEASV 331
pattern 272 ************************************************************
+ ++ L+ +A L A + ++L+
Sbjct: 315 TVARETDEMKRQALAWAMSVAGKRANALLAGESMSDQLVAEWAKADESVLSKLRERLGFG 374
Query: 332 GATFSNIGERFVPVYLHRDHLNLGERAVEVSKEDQNCASFVEVGKPIDYCQIRICNEANE 391
pattern 332 ************************************************************
++ G +P +G E+ +
Sbjct: 375 ELRWALSGAAPIPKETLAFFAGIGIPIAEIWGMSELSCVATASHPRDGRLGTVGKLLPGL 434
Query: 392 GLEDGFIGHIQIKGENVTQGYYNNPESTNRALTPDGWVKTGDLGFI-RKGNLVVTGREKD 450
pattern 392 ******************************************
+ G ++G V +GY P T A+ DGW+ TGD+ I G L V R+K+
Sbjct: 435 QGKIAEDGEYLVRGPLVMKGYRKEPAKTAEAIDSDGWLHTGDVFDIDSDGYLRVVDRKKE 494
Query: 451 IIF-VNGKNVYPHDIERVAI 469
+I GKN+ P +IE +
Sbjct: 495 LIINAAGKNMSPANIENTIL 514
>SWALL|Q9X7Y5|Q9X7Y5 Putative long chain fatty acid CoA ligase.
Length = 612
Score = 14.5 bits (44), Expect = 3e-04
Identities = 52/304 (17%), Positives = 101/304 (33%), Gaps = 2/304 (0%)
Query: 169 IQFSSGSTGDPKGVMLTHHNLIHNTCAIRNALAIDLKDTLLSWMPLTHDMGLIACHLVPA 228
pattern 174 *******************************************************
+ ++SG+TG+PKGV+LTH ++ N A+ + + + ++P H + +P
Sbjct: 194 VVYTSGTTGEPKGVVLTHRQVLANALALDAVVELPPHVEHICYLPFAHIAERMLGIYLPC 253
Query: 229 LAGINQNLMPTELFIRRPILWMKKAHEHKASILSSPNFGYNYFLKFLKDNKSYDWDLSHI 288
pattern 229 ************************************************************
+ L + + ++ A + + L + + +
Sbjct: 254 HRASHVYLCADPAAVGTVVRKVRPAQFFGVPRIWEKLCAAVRAVLSLMPAEQREVIDAAS 313
Query: 289 RVIANGAEPILPELCDEFLTRCAAFNMKRSAILNVYGLAEASVGATFSNIGERFVPVYLH 348
pattern 289 ************************************************************
V + +L + ++ +H
Sbjct: 314 AVAREHVGYRERGESPPAELEERYARAREEVLLPLLAAGGLDRVTWAASASAPMPVDVVH 373
Query: 349 RDHLNLGERAVEVSKEDQNCASFVEVGKPIDYCQIRICNEANEGLEDGFIGHIQIKGENV 408
pattern 349 ************************************************************
+ + + + + G I+++GE+V
Sbjct: 374 FWAGFGVVIMDAWGLTETTGVATTNSPRTGFRIGSVGRPVESVEVRLAADGEIEVRGESV 433
Query: 409 TQGYYNNPESTNRALTPDGWVKTGDLGFI-RKGNLVVTGREKDIIFVN-GKNVYPHDIER 466
pattern 409 *************************
GY S AL DGW+ TGD+G G L +T R+K++I + GKNV P +E
Sbjct: 434 FSGYLRPDGSVRSALDADGWLATGDIGRTDDDGYLWLTDRKKEMIITSTGKNVSPALVEN 493
Query: 467 VAIE 470
E
Sbjct: 494 ALKE 497
>SWISSPROT|Q10776|FD11_MYCTU Putative fatty-acid--CoA ligase fadD11 (EC
6.2.1.-) (Acyl-CoA synthetase).
Length = 571
Score = 14.5 bits (44), Expect = 3e-04
Identities = 60/320 (18%), Positives = 112/320 (35%), Gaps = 2/320 (0%)
Query: 152 YDHPASQYEPEADELAFIQFSSGSTGDPKGVMLTHHNLIHNTCAIRNALAIDLKDTLLSW 211
pattern 174 **************************************
+D ++ + +++ + ++SG+TG+PKGV +TH NL+ AI L I D + S+
Sbjct: 119 FDFESTWRAVQPEDIVTLIYTSGTTGNPKGVEMTHANLLFEGYAIDEVLGIRFGDRVTSF 178
Query: 212 MPLTHDMGLIACHLVPALAGINQNLMPTELFIRRPILWMKKAHEHKASILSSPNFGYNYF 271
pattern 212 ************************************************************
+P H + + + G + I + ++ + F
Sbjct: 179 LPSAHIADRMTGLYLQEMFGTQVTAVADARTIAAALPDVRPTVWGAVPRVWEKLKAGIEF 238
Query: 272 LKFLKDNKSYDWDLSHIRVIANGAEPILPELCDEFLTRCAAFNMKRSAILNVYGLAEASV 331
pattern 272 ************************************************************
+ ++ L+ +A L A + +L+
Sbjct: 239 TVARETDEMKRQALAWAMSVAGKRANALLAGESMSDQLVAEWAKADELVLSKLRERLGFG 298
Query: 332 GATFSNIGERFVPVYLHRDHLNLGERAVEVSKEDQNCASFVEVGKPIDYCQIRICNEANE 391
pattern 332 ************************************************************
++ G +P +G E+ +
Sbjct: 299 ELRWALSGAAPIPKETLAFFAGIGIPIAEIWGMSELSCVATASHPRDGRLGTVGKLLPGL 358
Query: 392 GLEDGFIGHIQIKGENVTQGYYNNPESTNRALTPDGWVKTGDLGFI-RKGNLVVTGREKD 450
pattern 392 ******************************************
+ G ++G V +GY P T A+ DGW+ TGD+ I G L V R+K+
Sbjct: 359 QGKIAEDGEYLVRGPLVMKGYRKEPAKTAEAIDSDGWLHTGDVFDIDSDGYLRVVDRKKE 418
Query: 451 IIF-VNGKNVYPHDIERVAI 469
+I GKN+ P +IE +
Sbjct: 419 LIINAAGKNMSPANIENTIL 438
Database: nrprot
Posted date: Mar 1, 2004 4:48 PM
Number of letters in database: 454,801,022
Number of sequences in database: 1,444,541
Lambda K H C
0.267 0.0410 0.140 0.500
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6
Number of Sequences: 1444541
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 1400
length of database: 454,801,022
effective HSP length: 136
effective length of query: 1264
effective length of database: 258,343,446
effective search space: 326546115744
effective search space used: 326546115744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)